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Kar, SP, Beesley, J, Al Olama, AA, Michailidou, K, Tyrer, J, Kote-Jarai, ZA, Lawrenson, K, Lindstrom, S, Ramus, SJ, Thompson, DJ, Kibel, AS, Dansonka-Mieszkowska, A, Michael, A, Dieffenbach, AK, Gentry-Maharaj, A, Whittemore, AS, Wolk, A, Monteiro, A, Peixoto, A, Kierzek, A, Cox, A, Rudolph, A, Gonzalez-Neira, A, Wu, AH, Lindblom, A, Swerdlow, A, Ziogas, A, Ekici, AB, Burwinkel, B, Karlan, BY, Nordestgaard, BG, Blomqvist, C, Phelan, C, McLean, C, Pearce, CL, Vachon, C, Cybulski, C, Slavov, C, Stegmaier, C, Maier, C, Ambrosone, CB, Hogdall, CK, Teerlink, CC, Kang, D, Tessier, DC, Schaid, DJ, Stram, DO, Cramer, DW, Neal, DE, Eccles, D, Flesch-Janys, D, Edwards, DRV, Wokozorczyk, D, Levine, DA, Yannoukakos, D, Sawyer, EJ, Bandera, EV, Poole, EM, Goode, EL, Khusnutdinova, E, Hogdall, E, Song, F, Bruinsma, F, Heitz, F, Modugno, F, Hamdy, FC, Wiklund, F, Giles, GG, Olsson, H, Wildiers, H, Ulmer, H-U, Pandha, H, Risch, HA, Darabi, H, Salvesen, HB, Nevanlinna, H, Gronberg, H, Brenner, H, Brauch, H, Anton-Culver, H, Song, H, Lim, H-Y, McNeish, I, Campbell, I, Vergote, I, Gronwald, J, Lubinski, J, Stanford, JL, Bentez, J, Doherty, JA, Permuth, JB, Chang-Claude, J, Donovan, JL, Dennis, J, Schildkraut, JM, Schleutker, J, Hopper, JL, Kupryjanczyk, J, Park, JY, Figueroa, J, Clements, JA, Knight, JA, Peto, J, Cunningham, JM, Pow-Sang, J, Batra, J, Czene, K, Lu, KH, Herkommer, K, Khaw, K-T, Matsuo, K, Muir, K, Offitt, K, Chen, K, Moysich, KB, Aittomaki, K, Odunsi, K, Kiemeney, LA, Massuger, LFAG, Fitzgerald, LM, Cook, LS, Cannon-Albright, L, Hooning, MJ, Pike, MC, Bolla, MK, Luedeke, M, Teixeira, MR, Goodman, MT, Schmidt, MK, Riggan, M, Aly, M, Rossing, MA, Beckmann, MW, Moisse, M, Sanderson, M, Southey, MC, Jones, M, Lush, M, Hildebrandt, MAT, Hou, M-F, Schoemaker, MJ, Garcia-Closas, M, Bogdanova, N, Rahman, N, Le, ND, Orr, N, Wentzensen, N, Pashayan, N, Peterlongo, P, Guenel, P, Brennan, P, Paulo, P, Webb, PM, Broberg, P, Fasching, PA, Devilee, P, Wang, Q, Cai, Q, Li, Q, Kaneva, R, Butzow, R, Kopperud, RK, Schmutzler, RK, Stephenson, RA, MacInnis, RJ, Hoover, RN, Winqvist, R, Ness, R, Milne, RL, Travis, RC, Benlloch, S, Olson, SH, McDonnell, SK, Tworoger, SS, Maia, SA, Berndt, S, Lee, SC, Teo, S-H, Thibodeau, SN, Bojesen, SE, Gapstur, SM, Kjaer, SK, Pejovic, T, Tammela, TLJ, Doerk, T, Bruening, T, Wahlfors, T, Key, TJ, Edwards, TL, Menon, U, Hamann, U, Mitev, V, Kosma, V-M, Setiawan, VW, Kristensen, V, Arndt, V, Vogel, W, Zheng, W, Sieh, W, Blot, WJ, Kluzniak, W, Shu, X-O, Gao, Y-T, Schumacher, F, Freedman, ML, Berchuck, A, Dunning, AM, Simard, J, Haiman, CA, Spurdle, A, Sellers, TA, Hunter, DJ, Henderson, BE, Kraft, P, Chanock, SJ, Couch, FJ, Hall, P, Gayther, SA, Easton, DF, Chenevix-Trench, G, Eeles, R, Pharoah, PDP and Lambrechts, D (2016) Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types CANCER DISCOVERY, 6 (9). pp. 1052-1067.

Kelly, Z, Moller-Levet, Carla, McGrath, S, Butler-Manuel, S, Madhuri, Thumuluru, Kierzek, Andrzej, Pandha, Hardev, Morgan, Richard and Michael, Agnieszka (2016) The prognostic significance of specific HOX gene expression patterns in ovarian cancer International Journal of Cancer, 139 (7). pp. 1608-1617.

Gusev, A, Shi, H, Kichaev, G, Pomerantz, M, Li, F, Long, HW, Ingles, SA, Kittles, RA, Strom, SS, Rybicki, BA, Nemesure, B, Isaacs, WB, Zheng, W, Pettaway, CA, Yeboah, ED, Tettey, Y, Biritwum, RB, Adjei, AA, Tay, E, Truelove, A, Niwa, S, Chokkalingam, AP, John, EM, Murphy, AB, Signorello, LB, Carpten, J, Leske, MC, Wu, S-Y, Hennis, AJM, Neslund-Dudas, C, Hsing, AW, Chu, L, Goodman, PJ, Klein, EA, Witte, JS, Casey, G, Kaggwa, S, Cook, MB, Stram, DO, Blot, WJ, Eeles, RA, Easton, D, Kote-Jarai, Z, Al Olama, AA, Benlloch, S, Muir, K, Giles, GG, Southey, MC, Fitzgerald, LM, Gronberg, H, Wiklund, F, Aly, M, Henderson, BE, Schleutker, J, Wahlfors, T, Tammela, TLJ, Nordestgaard, BG, Key, TJ, Travis, RC, Neal, DE, Donovan, JL, Hamdy, FC, Pharoah, P, Pashayan, N, Khaw, K-T, Stanford, JL, Thibodeau, SN, McDonnell, SK, Schaid, DJ, Maier, C, Vogel, W, Luedeke, M, Herkommer, K, Kibel, AS, Cybulski, C, Wokolorczyk, D, Kluzniak, W, Cannon-Albright, L, Teerlink, C, Brenner, H, Dieffenbach, AK, Arndt, V, Park, JY, Sellers, TA, Lin, H-Y, Slavov, C, Kaneva, R, Mitev, V, Batra, J, Spurdle, A, Clements, JA, Teixeira, MR, Pandha, HS, Michael, A, Paulo, P, Maia, S, Kierzek, A, Conti, DV, Albanes, D, Berg, C, Berndt, SI, Campa, D, Crawford, ED, Diver, WR, Gapstur, SM, Gaziano, JM, Giovannucci, E, Hoover, R, Hunter, DJ, Johansson, M, Kraft, P, Le Marchand, L, Lindstrom, S, Navarro, C, Overvad, K, Riboli, E, Siddiq, A, Stevens, VL, Trichopoulos, D, Vineis, P, Yeager, M, Trynka, G, Raychaudhuri, S, Schumacher, FR, Price, AL, Freedman, ML, Haiman, CA, Pasaniuc, B, Cook, M, Guy, M, Govindasami, K, Leongamornlert, D, Sawyer, EJ, Wilkinson, R, Saunders, EJ, Tymrakiewicz, M, Dadaev, T, Morgan, A, Fischer, C, Hazel, S, Livni, N, Lophatananon, A, Pedersen, J, Hopper, JL, Adolfson, J, Stattin, P, Johansson, J-E, Cavalli-Bjoerkman, C, Karlsson, A, Broms, M, Auvinen, A, Kujala, P, Maeaettaenen, L, Murtola, T, Taari, K, Weischer, M, Nielsen, SF, Klarskov, P, Roder, A, Iversen, P, Wallinder, H, Signorello, LB, Blot, WJ, Tillmans, L, Riska, S, Wang, L, Rinckleb, A, Lubiski, J, Stegmaier, C, Pow-Sang, J, Park, H, Radlein, S, Rincon, M, Haley, J, Zachariah, B, Kachakova, D, Popov, E, Mitkova, A, Vlahova, A, Dikov, T, Christova, S, Heathcote, P, Wood, G, Malone, G, Saunders, K, Eckert, A, Yeadon, T, Kerr, K, Collins, A, Turner, M, Srinivasan, S, Kedda, M-A, Alexander, K, Omara, T, Wu, H, Henrique, R, Pinto, P, Santos, J and Barros-Silva, J (2016) Atlas of prostate cancer heritability in European and African-American men pinpoints tissue-specific regulation Nature Communications, 7.

Wu, H, von Kamp, A, Leoncikas, V, Mori, W, Sahin, N, Gevorgyan, A, Linley, C, Grabowski, M, Mannan, AA, Stoy, N, Stewart, GR, Ward, LT, Lewis, DJM, Sroka, J, Matsuno, H, Klamt, S, Westerhoff, HV, McFadden, J, Plant, NJ and Kierzek, AM (2016) MUFINS: Multi-Formalism Interaction Network Simulator npj Systems Biology and Applications.

Szulkin, R, Karlsson, R, Whitington, T, Aly, M, Gronberg, H, Eeles, RA, Easton, DF, Kote-Jarai, Z, Al Olama, AA, Benlloch, S, Muir, K, Giles, GG, Southey, MC, FitzGerald, LM, Henderson, BE, Schumacher, FR, Haiman, CA, Sipeky, C, Tammela, TLJ, Nordestgaard, BG, Key, TJ, Travis, RC, Neal, DE, Donovan, JL, Hamdy, FC, Pharoah, PDP, Pashayan, N, Khaw, K-T, Stanford, JL, Thibodeau, SN, McDonnell, SK, Schaid, DJ, Maier, C, Vogel, W, Luedeke, M, Herkommer, K, Kibel, AS, Cybulski, C, Lubinski, J, Kluzniak, W, Cannon-Albright, L, Brenner, H, Herrmann, V, Holleczek, B, Park, JY, Sellers, TA, Lim, H-Y, Slavov, C, Kaneva, RP, Mitev, VI, Spurdle, A, Teixeira, MR, Paulo, P, Maia, S, Pandha, H, Michael, A, Kierzek, A, Batra, J, Clements, JA, Albanes, D, Andriole, GL, Berndt, SI, Chanock, S, Gapstur, SM, Giovannucci, EL, Hunter, DJ, Kraft, P, Le Marchand, L, Ma, J, Mondul, AM, Penney, KL, Stampfer, MJ, Stevens, VL, Weinstein, SJ, Trichopoulou, A, Bueno-de-Mesquita, BH, Tjonneland, A, Cox, DG, Maehle, L, Schleutker, J, Lindstroem, S and Wiklund, F (2015) Genome-Wide Association Study of Prostate Cancer-Specific Survival CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION, 24 (11). pp. 1796-1800.

Mannan, AA, Toya, T, Shimizu, K, McFadden, J, Kierzek, AM and Rocco, A (2015) Integrating Kinetic Model of E. coli with Genome Scale Metabolic Fluxes Overcomes Its Open System Problem and Reveals Bistability in Central Metabolism PLoS One, 10 (10), e01395.

Al Olama, AA, Dadaev, T, Hazelett, DJ, Li, Q, Leongamornlert, D, Saunders, EJ, Stephens, S, Cieza-Borrella, C, Whitmore, I, Garcia, SB, Giles, GG, Southey, MC, Fitzgerald, L, Gronberg, H, Wiklund, F, Aly, M, Henderson, BE, Schumacher, F, Haiman, CA, Schleutker, J, Wahlfors, T, Tammela, TL, Nordestgaard, BG, Key, TJ, Travis, RC, Neal, DE, Donovan, JL, Hamdy, FC, Pharoah, P, Pashayan, N, Khaw, K-T, Stanford, JL, Thibodeau, SN, Mcdonnell, SK, Schaid, DJ, Maier, C, Vogel, W, Luedeke, M, Herkommer, K, Kibel, AS, Cybulski, C, Wokolorczyk, D, Kluzniak, W, Cannon-Albright, L, Brenner, H, Butterbach, K, Arndt, V, Park, JY, Sellers, T, Lin, H-Y, Slavov, C, Kaneva, R, Mitev, V, Batra, J, Clements, JA, Spurdle, A, Teixeira, MR, Paulo, P, Maia, S, Pandha, H, Michael, A, Kierzek, A, Govindasami, K, Guy, M, Lophatonanon, A, Muir, K, Vinuela, A, Brown, AA, Freedman, M, Conti, DV, Easton, D, Coetzee, GA, Eeles, RA and Kote-Jarai, Z (2015) Multiple novel prostate cancer susceptibility signals identified by fine-mapping of known risk loci among Europeans HUMAN MOLECULAR GENETICS, 24 (19). pp. 5589-5602.

Szulkin, R, Whitington, T, Eklund, M, Aly, M, Eeles, RA, Easton, D, Kote-Jarai, Z, Al Olama, AA, Benlloch, S, Muir, K, Giles, GG, Southey, MC, Fitzgerald, LM, Henderson, BE, Schumacher, F, Haiman, CA, Schleutker, J, Wahlfors, T, Tammela, TLJ, Nordestgaard, BG, Key, TJ, Travis, RC, Neal, DE, Donovan, JL, Hamdy, FC, Pharoah, P, Pashayan, N, Khaw, K-T, Stanford, JL, Thibodeau, SN, McDonnell, SK, Schaid, DJ, Maier, C, Vogel, W, Luedeke, M, Herkommer, K, Kibel, AS, Cybulski, C, Lubinski, J, Kluzniak, W, Cannon-Albright, L, Brenner, H, Butterbach, K, Stegmaier, C, Park, JY, Sellers, T, Lim, H-Y, Slavov, C, Kaneva, R, Mitev, V, Batra, J, Clements, JA, Spurdle, A, Teixeira, MR, Paulo, P, Maia, S, Pandha, H, Michael, A, Kierzek, A, Gronberg, H and Wiklund, F (2015) Prediction of Individual Genetic Risk to Prostate Cancer Using a Polygenic Score PROSTATE, 75 (13). pp. 1467-1474.

Mendum, TA, Wu, H, Kierzek, AM and Stewart, GR (2015) Lipid metabolism and Type VII secretion systems dominate the genome scale virulence profile of Mycobacterium tuberculosis in human dendritic cells BMC Genomics, 16, ARTN 3.

Fisher, CP, Khoury, M, Barber, AL, Mazzatti, DJ, Plant, NJ, Kierzek, AM and Moore, B (2015) Simulation of the PPAR alpha regulome predicts PPAR alpha activation exacerbates the development of hepatic steatosis PROCEEDINGS OF THE NUTRITION SOCIETY, 74 (OCE5). E283-E283.

Fisher, CP, Kierzek, AM, Plant, NJ and Moore, JB (2014) Systems biology approaches for studying the pathogenesis of non-alcoholic fatty liver disease WORLD JOURNAL OF GASTROENTEROLOGY, 20 (41). pp. 15070-15078.

Al Olama, AA, Kote-Jarai, Z, Berndt, SI, Conti, DV, Schumacher, F, Han, Y, Benlloch, S, Hazelett, DJ, Wang, Z, Saunders, E, Leongamornlert, D, Lindstrom, S, Jugurnauth-Little, S, Dadaev, T, Tymrakiewicz, M, Stram, DO, Rand, K, Wan, P, Stram, A, Sheng, X, Pooler, LC, Park, K, Xia, L, Tyrer, J, Kolonel, LN, Le Marchand, L, Hoover, RN, Machiela, MJ, Yeager, M, Burdette, L, Chung, CC, Hutchinson, A, Yu, K, Goh, C, Ahmed, M, Govindasami, K, Guy, M, Tammela, TLJ, Auvinen, A, Wahlfors, T, Schleutker, J, Visakorpi, T, Leinonen, KA, Xu, J, Aly, M, Donovan, J, Travis, RC, Key, TJ, Siddiq, A, Canzian, F, Khaw, K-T, Takahashi, A, Kubo, M, Pharoah, P, Pashayan, N, Weischer, M, Nordestgaard, BG, Nielsen, SF, Klarskov, P, Roder, MA, Iversen, P, Thibodeau, SN, McDonnell, SK, Schaid, DJ, Stanford, JL, Kolb, S, Holt, S, Knudsen, B, Coll, AH, Gapstur, SM, Diver, WR, Stevens, VL, Maier, C, Luedeke, M, Herkommer, K, Rinckleb, AE, Strom, SS, Pettaway, C, Yeboah, ED, Tettey, Y, Biritwum, RB, Adjei, AA, Tay, E, Truelove, A, Niwa, S, Choklcalingam, AP, Cannon-Albright, L, Cybulski, C, Wokolorczyk, D, Kluzniak, W, Park, J, Sellers, T, Lin, H-Y, Isaacs, WB, Partin, AW, Brenner, H, Dieffenbach, AK, Stegmaier, C, Chen, C, Giovannucci, EL, Ma, J, Stampfer, M, Penney, KL, Mucci, L, John, EM, Ingles, SA, Kittles, RA, Murphy, AB, Pandha, H, Michael, A, Kierzek, AM, Blot, W, Signorello, LB, Zheng, W, Albanes, D, Virtamo, J, Weinstein, S, Nemesure, B, Carpten, J, Leske, C, Wu, S-Y, Hennis, A, Kibel, AS, Rybicki, BA, Neslund-Dudas, C, Hsing, AW, Chu, L, Goodman, PJ, Klein, EA, Zheng, SL, Batra, J, Clements, J, Spurdle, A, Teixeira, MR, Paulo, P, Maia, S, Slavov, C, Kaneva, R, Mitev, V, Witte, JS, Casey, G, Gillanders, EM, Seminara, D, Riboli, E, Hamdy, FC, Coetzee, GA, Li, Q, Freedman, ML, Hunter, DJ, Muir, K, Gronberg, H, Nea, DE, Southey, M, Giles, GG, Severi, G, Cook, MB, Nakagawa, H, Wiklund, F, Kraft, P, Chanock, SJ, Henderson, BE, Easton, DF, Eeles, RA and Haiman, CA (2014) A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer NATURE GENETICS, 46 (10). pp. 1103-1109.

Mendum, TA, Schuenemann, VJ, Roffey, S, Taylor, GM, Wu, H, Singh, P, Tucker, K, Hinds, J, Cole, ST, Kierzek, AM, Nieselt, K, Krause, J and Stewart, GR (2014) Mycobacterium leprae genomes from a British medieval leprosy hospital: Towards understanding an ancient epidemic BMC Genomics, 15 (1).

Mendum, TA, Schuenemann, VJ, Roffey, S, Taylor, GM, Wu, H, Singh, P, Tucker, K, Hinds, J, Cole, ST, Kierzek, AM, Nieselt, K, Krause, J and Stewart, GR (2014) Mycobacterium leprae genomes from a British medieval leprosy hospital: towards understanding an ancient epidemic BMC GENOMICS, 15, ARTN 2.

Leoncikas, V, Wu, H, Ward, LT, Kierzek, AM and Plant, NJ (2014) Predicting the metabolic landscape of poor prognosis breast cancer INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE, 34. S28-S28.

Fisher, CP, Plant, NJ, Moore, JB and Kierzek, AM (2013) QSSPN: dynamic simulation of molecular interaction networks describing gene regulation, signalling and whole-cell metabolism in human cells. Bioinformatics, 29 (24). pp. 3181-3190.

Lofthouse, EK, Wheeler, PR, Beste, DJV, Khatri, BL, Wu, H, Mendum, TA, Kierzek, AM and McFadden, J (2013) Systems-Based Approaches to Probing Metabolic Variation within the Mycobacterium tuberculosis Complex PLOS ONE, 8 (9), ARTN e7591.

Rocco, A, Kierzek, AM and McFadden, J (2013) Slow Protein Fluctuations Explain the Emergence of Growth Phenotypes and Persistence in Clonal Bacterial Populations PLoS One, 8 (1), e54272.

Zakrzewski, P, Medema, MH, Takano, E, Zakrzewski, P, Medema, MH, Breitling, R, Gevorgyan, A, Kierzek, AM and Breitling, R (2012) MultiMetEval: Comparative and Multi-Objective Analysis of Genome-Scale Metabolic Models PLoS ONE, 7 (12).

Allenby, NE, Laing, E, Bucca, G, Kierzek, AM and Smith, CP (2012) Diverse control of metabolism and other cellular processes in Streptomyces coelicolor by the PhoP transcription factor: genome-wide identification of in vivo targets. Nucleic Acids Res.

Hoyle, RB, Avitabile, D and Kierzek, AM (2012) Equation-free analysis of two-component system signalling model reveals the emergence of co-existing phenotypes in the absence of multistationarity. PLoS Computational Biology, 8 (6).

Stoy, N, Chen, S and Kierzek, AM (2012) Studying prostate cancer as a network disease by qualitative computer simulation with Stochastic Petri Nets CEUR Workshop Proceedings, 852. pp. 76-80.

Mendum, TA, Newcombe, J, Mannan, AA, Kierzek, AA and McFadden, J (2011) Interrogation of global mutagenesis data with a genome scale model of Neisseria meningitidis to assess gene fitness in vitro and in sera. Genome Biol, 12 (12).

Sroka, J, Krupa, Ł, Kierzek, AM and Tyszkiewicz, J (2011) CalcTav--integration of a spreadsheet and Taverna workbench. Bioinformatics, 27 (18). pp. 2618-2619.

Bonde, BK, Beste, DJV, Laing, E, Kierzek, AM and McFadden, J (2011) Differential Producibility Analysis (DPA) of Transcriptomic Data with Metabolic Networks: Deconstructing the Metabolic Response of M. tuberculosis PLOS COMPUTATIONAL BIOLOGY, 7 (6), ARTN e.

Gevorgyan, A, Bushell, ME, Avignone-Rossa, C and Kierzek, AM (2011) SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networks BIOINFORMATICS, 27 (3). pp. 433-434.

Sroka, J, Bieniasz-Krzywiec, L, Gwóźdź, S, Leniowski, D, Lącki, J, Markowski, M, Avignone-Rossa, C, Bushell, ME, McFadden, J and Kierzek, AM (2011) Acorn: a grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface. BMC Bioinformatics, 12 (196).

Kadir, TAA, Mannan, AA, Kierzek, AM, McFadden, J and Shimizu, K (2010) Modeling and simulation of the main metabolism in Escherichia coli and its several single-gene knockout mutants with experimental verification MICROBIAL CELL FACTORIES, 9, ARTN 8.

Estorninho, M, Smith, H, Thole, J, Harders-Westerveen, J, Kierzek, A, Butler, RE, Neyrolles, O and Stewart, GR (2010) ClgR regulation of chaperone and protease systems is essential for Mycobacterium tuberculosis parasitism of the macrophage Microbiology, 156 (11). pp. 3445-3455.

Kierzek, AM, Zhou, L and Wanner, BL (2010) Stochastic kinetic model of two component system signalling reveals all-or-none, graded and mixed mode stochastic switching responses MOLECULAR BIOSYSTEMS, 6 (3). pp. 531-542.

Lewis, RA, Laing, E, Allenby, N, Bucca, G, Brenner, V, Harrison, M, Kierzek, AM and Smith, CP (2010) Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization. BMC Genomics, 11.

Beste, DJ, Espasa, M, Bonde, B, Kierzek, AM, Stewart, GR and McFadden, J (2009) The genetic requirements for fast and slow growth in mycobacteria. PLoS One, 4 (4), e5349. - - -.

Beste, DJ, Espasa, M, Bonde, B, Kierzek, AM, Stewart, GR and McFadden, J (2009) The genetic requirements for fast and slow growth in mycobacteria. PLoS One, 4 (4), e5349. - - -.

Komorowski, M, Miekisz, J and Kierzek, AM (2009) Translational Repression Contributes Greater Noise to Gene Expression than Transcriptional Repression BIOPHYS J, 96 (2). pp. 372-384.

Khannapho, C, Zhao, H, Bonde, BK, Kierzek, AM, Avignone-Rossa, CA and Bushell, ME (2008) Selection of objective function in genome scale flux balance analysis for process feed development in antibiotic production METABOLIC ENGINEERING, 10 (5). pp. 227-233.

Jacewicz, A, Makiela, K, Kierzek, A, Drake, JW and Bebenek, A (2007) The roles of Tyr391 and Tyr619 in RB69 DNA polymerase replication fidelity JOURNAL OF MOLECULAR BIOLOGY, 368 (1). pp. 18-29.

Beste, DJV, Hooper, T, Stewart, G, Bonde, B, Avignone-Rossa, C, Bushell, M, Wheeler, P, Klamt, S, Kierzek, AM and McFadden, J (2007) GSMN-TB: a web-based genome scale network model of Mycobacterium tuberculosis metabolism GENOME BIOLOGY, 8 (5), ARTN r.

Bushell, ME, Sequeira, SIP, Khannapho, C, Zhao, H, Chater, KF, Butler, MJ, Kierzek, AM and Avignone-Rossa, CA (2006) The use of genome scale metabolic flux variability analysis for process feed formulation based on an investigation of the effects of the zwf mutation on antibiotic production in Streptomyces coelicolor ENZYME AND MICROBIAL TECHNOLOGY, 39 (6). pp. 1347-1353.

Sroka, J, Kaczor, G, Tyszkiewicz, J and Kierzek, AM (2006) XQTav: An XQuery processor for Taverna environment BIOINFORMATICS, 22 (10). pp. 1280-1281.

Caldwell, RB and Kierzek, AM (2006) Genome resources for the DT40 community. Subcell Biochem, 40. pp. 25-37.

Hamimes, S, Arakawa, H, Stasiak, AZ, Kierzek, AM, Hirano, S, Yang, YG, Takata, M, Stasiak, A, Buerstedde, JM and Van Dyck, E (2005) RDM1, a novel RNA recognition motif (RRM)-containing protein involved in the cell response to cisplatin in vertebrates JOURNAL OF BIOLOGICAL CHEMISTRY, 280 (10). pp. 9225-9235.

Zaim, J, Speina, E and Kierzek, AM (2005) Identification of new genes regulated by the Crt1 transcription factor, an effector of the DNA damage checkpoint pathway in Saccharomyces cerevisiae JOURNAL OF BIOLOGICAL CHEMISTRY, 280 (1). pp. 28-37.

Caldwell, RB, Kierzek, AM, Arakawa, H, Bezzubov, Y, Zaim, J, Fiedler, P, Kutter, S, Blagodatski, A, Kostovska, D, Koter, M, Plachy, J, Carninci, P, Hayashizaki, Y and Buerstedde, JM (2005) Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis GENOME BIOL, 6 (1), R6.

Wahl, MB, Caldwell, RB, Kierzek, AM, Arakawa, H, Eyras, E, Hubner, N, Jung, C, Soeldenwagner, M, Cervelli, M, Wang, YD, Liebscher, V and Buerstedde, JM (2004) Evaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell line BMC GENOMICS, 5, ARTN 9.

Hillier, LW, Miller, W, Birney, E, Warren, W, Hardison, RC, Ponting, CP, Bork, P, Burt, DW, Groenen, MAM, Delany, ME, Dodgson, JB, Chinwalla, AT, Cliften, PF, Clifton, SW, Delehaunty, KD, Fronick, C, Fulton, RS, Graves, TA, Kremitzki, C, Layman, D, Magrini, V, McPherson, JD, Miner, TL, Minx, P, Nash, WE, Nhan, MN, Nelson, JO, Oddy, LG, Pohl, CS, Randall-Maher, J, Smith, SM, Wallis, JW, Yang, SP, Romanov, MN, Rondelli, CM, Paton, B, Smith, J, Morrice, D, Daniels, L, Tempest, HG, Robertson, L, Masabanda, JS, Griffin, DK, Vignal, A, Fillon, V, Jacobbson, L, Kerje, S, Andersson, L, Crooijmans, RPM, Aerts, J, van der Poel, JJ, Ellegren, H, Caldwell, RB, Hubbard, SJ, Grafham, DV, Kierzek, AM, McLaren, SR, Overton, IM, Arakawa, H, Beattie, KJ, Bezzubov, Y, Boardman, PE, Bonfield, JK, Croning, MDR, Davies, RM, Francis, MD, Humphray, SJ, Scott, CE, Taylor, RG, Tickle, C, Brown, WRA, Rogers, J, Buerstedde, JM, Wilson, SA, Stubbs, L, Ovcharenko, I, Gordon, L, Lucas, S, Miller, MM, Inoko, H, Shiina, T, Kaufman, J, Salomonsen, J, Skjoedt, K, Wong, GKS, Wang, J, Liu, B, Wang, J, Yu, J, Yang, HM, Nefedov, M, Koriabine, M, deJong, PJ, Goodstadt, L, Webber, C, Dickens, NJ, Letunic, I, Suyama, M, Torrents, D, von Mering, C, Zdobnov, EM, Makova, K, Nekrutenko, A, Elnitski, L, Eswara, P, King, DC, Yang, S, Tyekucheva, S, Radakrishnan, A, Harris, RS, Chiaromonte, F, Taylor, J, He, JB, Rijnkels, M, Griffiths-Jones, S, Ureta-Vidal, A, Hoffman, MM, Severin, J, Searle, SMJ, Law, AS, Speed, D, Waddington, D, Cheng, Z, Tuzun, E, Eichler, E, Bao, ZR, Flicek, P, Shteynberg, DD, Brent, MR, Bye, JM, Huckle, EJ, Chatterji, S, Dewey, C, Pachter, L, Kouranov, A, Mourelatos, Z, Hatzigeorgiou, AG, Paterson, AH, Ivarie, R, Brandstrom, M, Axelsson, E, Backstrom, N, Berlin, S, Webster, MT, Pourquie, O, Reymond, A, Ucla, C, Antonarakis, SE, Long, MY, Emerson, JJ, Betran, E, Dupanloup, I, Kaessmann, H, Hinrichs, AS, Bejerano, G, Furey, TS, Harte, RA, Raney, B, Siepel, A, Kent, WJ, Haussler, D, Eyras, E, Castelo, R, Abril, JF, Castellano, S, Camara, F, Parra, G, Guigo, R, Bourque, G, Tesler, G, Pevzner, PA, Smit, A, Fulton, LA, Mardis, ER and Wilson, RK (2004) Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution NATURE, 432 (7018). pp. 695-716.

Puchalka, J and Kierzek, AM (2004) Bridging the gap between stochastic and deterministic regimes in the kinetic simulations of the biochemical reaction networks BIOPHYSICAL JOURNAL, 86 (3). pp. 1357-1372.

Caldwell, Randolph B, Kierzek, Andrzej M, Arakawa, Hiroshi, Bezzubov, Yuri, Zaim, Jolanta, Fiedler, Petra, Kutter, Stefan, Blagodatski, Artem, Kostovska, Diyana, Koter, Marek, Plachy, Jiri, Carninci, Piero, Hayashizaki, Yoshihide and Buerstedde, Jean-Marie (2004) Full-Length cDNAs from Chicken Bursal Lymphocytes to Facilitate Gene Function Analysis Genome Biology, 6 (R6).

Zaim, J and Kierzek, AM (2003) Domain organization of activation-induced cytidine deaminase NATURE IMMUNOLOGY, 4 (12). p. 1153.

Zaim, J and Kierzek, AM (2003) The structure of full-length LysR-type transcriptional regulators. Modeling of the full-length OxyR transcription factor dimer NUCLEIC ACIDS RESEARCH, 31 (5). pp. 1444-1454.

Kierzek, AM (2002) STOCKS: STOChastic kinetic Simulations of biochemical systems with gillespie algorithm BIOINFORMATICS, 18 (3). pp. 470-481.

Kucharczyk, R, Kierzek, AM, Slonimski, PP and Rytka, J (2001) The Ccz1 protein interacts with Ypt7 GTPase during fusion of multiple transport intermediates with the vacuole in S-cerevisiae JOURNAL OF CELL SCIENCE, 114 (17). pp. 3137-3145.

Kucharczyk, R, Kierzek, AM, Slonimski, PP and Rytka, J (2001) The Ccz1p interacts with Ypt7 GTPase in the process of fusion of multiple transport intermediates with the vacuole in S.cerevisiae. YEAST, 18. S242-S242.

Kierzek, AM and Zielenkiewicz, P (2001) Models of protein crystal growth BIOPHYSICAL CHEMISTRY, 91 (1). pp. 1-20.

Kierzek, AM, Zaim, J and Zielenkiewicz, P (2001) The effect of transcription and translation initiation frequencies on the stochastic fluctuations in prokaryotic gene expression JOURNAL OF BIOLOGICAL CHEMISTRY, 276 (11). pp. 8165-8172.

Kierzek, AM, Pokarowski, P and Zielenkiewicz, P (2000) Microscopic model of protein crystal growth BIOPHYSICAL CHEMISTRY, 87 (1). pp. 43-61.

Georgalis, Y, Kierzek, AM and Saenger, W (2000) Cluster formation in aqueous electrolyte solutions observed by dynamic light scattering JOURNAL OF PHYSICAL CHEMISTRY B, 104 (15). pp. 3405-3406.

Kaczanowski, S, Kierzek, AM and Zielenkiewicz, P (1999) Shuffling algorhithm for protein design PROTEIN AND PEPTIDE LETTERS, 6 (2). pp. 99-104.

Kierzek, AM, Pokarowski, P and Zielenkiewicz, P (1999) Lattice simulations of protein crystal formation BIOPHYSICAL CHEMISTRY, 77 (2-3). pp. 123-137.

Kierzek, AM, Wolf, WM and Zielenkiewicz, P (1997) Simulations of nucleation and early growth stages of protein crystals BIOPHYSICAL JOURNAL, 73 (2). pp. 571-580.

Book Section

Avignone Rossa, C, Kierzek, A and Bushell, ME (2013) Secondary Metabolite Production in Streptomyces In: Encyclopedia of Systems Biology. Springer Verlag, New York, pp. 1903-1913. ISBN 1441998624

Rocco, A and Kierzek, AM (2013) Stochastic effects in metabolic pathways In: Encyclopedia of Systems Biology. Springer. ISBN 978-1-4419-9862-0

Rocco, A, Kierzek, AM and McFadden, J (2013) Stochastic gene expression in bacterial pathogens: A mechanism for persistence? In: Systems Biology of Tuberculosis. Springer, pp. 157-177. ISBN 1461449650

Conference or Workshop Item

Furmanek, E, Morawiec, E, Lipko, A, Jozwiak, A, Swiezewska, E, Kierzek, A, Boguta, M and Adamczyk, M (2015) Maf1 protein Has a wide effect on metabolism in Saccharomyces cerevisiae In: 27th International Conference on Yeast Genetics and Molecular Biology (ICYGMB), 2015-09-06 - 2015-09-12, Fondazione Edmund Mach, Levico Terme, ITALY.

Fisher, CP, Kierzek, AM, Plant, NJ and Moore, JB (2014) DYNAMIC MODELLING OF HEPATOCYTE REGULATORY NETWORKS USING NOVEL PETRI NET-LINKED FLUX BALANCE ANALYSIS In: 10th International Meeting of the International-Society-for-the-Study-of-Xenobiotics (ISSX), 2013-09-29 - 2013-10-03, Toronto, CANADA.

Speina, E, Kierzek, AM and Tudek, B (2003) Chemical rearrangement and repair pathways of 1,N-6-ethenoadenine In: 32nd Annual Meeting of the European-Environmental-Mutagen-Society, 2002-09-03 - 2002-09-07, WARSAW, POLAND.

Book

McFadden, J, Beste, DJV and Kierzek, AM (2012) Systems Biology of Tuberculosis Springer. ISBN 1461449669

This list was generated on Thu Nov 23 03:57:16 2017 UTC.

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