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Items where Author is "Gerber, A"

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Article

King, Helen A., El-Sharif, Hazim F., Matia-González, Ana M., Iadevaia, Valentina, Fowotade, Adeola, Reddy, Subrayal M. and Gerber, Andre (2017) Generation of ribosome imprinted polymers for sensitive detection of translational responses Scientific Reports, 7 (1).

Matia-González, AM, Iadevaia, Valentina and Gerber, Andre (2017) A versatile tandem RNA isolation procedure to capture in vivo formed mRNA-protein complexes Methods, 118-9. pp. 93-100.

Subasic, D, Stoeger, T, Eisenring, S, Matia-González, AM, Imig, J, Zheng, X, Xiong, L, Gisler, P, Eberhard, R, Holtackers, R, Gerber, AP, Pelkmans, L and Hengartner, MO (2016) Post-transcriptional control of executioner caspases by RNA-binding proteins Genes and Development, 30. pp. 2213-2225.

Matia-González, AM, Laing, EE and Gerber, AP (2015) Conserved mRNA-binding proteomes in eukaryotic organisms Nature Structural and Molecular Biology, 22 (12). pp. 1027-1033.

Iadevaia, V and Gerber, AP (2015) Combinatorial Control of mRNA Fates by RNA-Binding Proteins and Non-Coding RNAs Biomolecules, 5 (4). pp. 2207-2222.

King, HA and Gerber, AP (2014) Translatome profiling: methods for genome-scale analysis of mRNA translation Brief Funct Genomics.

Towbin, H, Wenter, P, Guennewig, B, Imig, J, Zagalak, JA, Gerber, AP and Hall, J (2013) Systematic screens of proteins binding to synthetic microRNA precursors. Nucleic Acids Research, 41 (3), e47.

Towbin, H, Wenter, P, Guennewig, B, Imig, J, Zagalak, JA, Gerber, AP and Hall, J (2012) Systematic screens of proteins binding to synthetic microRNA precursors. Nucleic Acids Research.

Imig, J, Kanitz, A and Gerber, Andre (2012) RNA regulons and the RNA-protein interaction network BioMol. Concepts, 3 (5).

Jovanovic, M, Reiter, L, Clark, A, Weiss, M, Picotti, P, Rehrauer, H, Frei, A, Neukomm, LJ, Kaufman, E, Wollscheid, B, Simard, MJ, Miska, EA, Aebersold, R, Gerber, AP and Hengartner, MO (2012) RIP-chip-SRM--a new combinatorial large-scale approach identifies a set of translationally regulated bantam/miR-58 targets in C. elegans. Genome Res.

Schenk, L, Meinel, DM, Strässer, K and Gerber, AP (2012) La-motif-dependent mRNA association with Slf1 promotes copper detoxification in yeast. RNA, 18 (3). pp. 449-461.

Kanitz, A, Imig, J, Dziunycz, PJ, Primorac, A, Galgano, A, Hofbauer, GF, Gerber, AP and Detmar, M (2012) The Expression Levels of MicroRNA-361-5p and Its Target VEGFA Are Inversely Correlated in Human Cutaneous Squamous Cell Carcinoma. PLoS One, 7 (11).

Scherrer, T, Femmer, C, Schiess, R, Aebersold, R and Gerber, AP (2011) Defining potentially conserved RNA regulons of homologous zinc-finger RNA-binding proteins. Genome Biology, 12 (1).

Mittal, N, Scherrer, T, Gerber, AP and Janga, SC (2011) Interplay between posttranscriptional and posttranslational interactions of RNA-binding proteins Journal of Molecular Biology, 409 (3). pp. 466-479.

Azzouzi, I, Moest, H, Winkler, J, Fauchère, J-C, Gerber, AP, Wollscheid, B, Stoffel, M, Schmugge, M and Speer, O (2011) Microrna-96 directly inhibits γ-Globin expression in human erythropoiesis PLoS ONE, 6 (7).

Galgano, A and Gerber, AP (2011) RNA-binding protein immunopurification-microarray (RIP-Chip) analysis to profile localized RNAs. Methods Mol Biol, 714. pp. 369-385.

Kanitz, A and Gerber, AP (2010) Circuitry of mRNA regulation. Wiley Interdiscip Rev Syst Biol Med, 2 (2). pp. 245-251.

Eliyahu, E, Pnueli, L, Melamed, D, Scherrer, T, Gerber, AP, Pines, O, Rapaport, D and Arava, Y (2010) Tom20 mediates localization of mRNAs to mitochondria in a translation-dependent manner Molecular and Cellular Biology, 30 (1). pp. 284-294.

Scherrer, T, Mittal, N, Janga, SC and Gerber, AP (2010) A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes. PLoS One, 5 (11).

Halbeisen, RE, Scherrer, T and Gerber, AP (2009) Affinity purification of ribosomes to access the translatome. Methods, 48 (3). pp. 306-310.

Halbach, A, Zhang, H, Wengi, A, Jablonska, Z, Gruber, IML, Halbeisen, RE, Dehé, P-M, Kemmeren, P, Holstege, F, Géli, V, Gerber, AP and Dichtl, B (2009) Cotranslational assembly of the yeast SET1C histone methyltransferase complex EMBO Journal, 28 (19). pp. 2959-2970.

San Paolo, S, Vanacova, S, Schenk, L, Scherrer, T, Blank, D, Keller, W and Gerber, AP (2009) Distinct roles of non-canonical poly(A) polymerases in RNA metabolism PLoS Genetics, 5 (7). pp. 1-17.

Halbeisen, RE and Gerber, AP (2009) Stress-dependent coordination of transcriptome and translatome in yeast PLoS Biology, 7 (5). 0001-0015.

Halbeisen, RE, Galgano, A, Scherrer, T and Gerber, AP (2008) Post-transcriptional gene regulation: from genome-wide studies to principles. Cell Mol Life Sci, 65 (5). pp. 798-813.

Muraro, NI, Weston, AJ, Gerber, AP, Luschnig, S, Moffat, KG and Baines, RA (2008) Pumilio binds para mRNA and requires Nanos and Brat to regulate sodium current in drosophila motoneurons Journal of Neuroscience, 28 (9). pp. 2099-2109.

Galgano, A, Forrer, M, Jaskiewicz, L, Kanitz, A, Zavolan, M and Gerber, AP (2008) Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system. PLoS One, 3 (9).

Hasegawa, Y, Irie, K and Gerber, AP (2008) Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast RNA, 14 (11). pp. 2333-2347.

Hogan, DJ, Riordan, DP, Gerber, AP, Herschlag, D and Brown, PO (2008) Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system PLoS Biology, 6 (10). pp. 2297-2313.

Gerber, AP, Luschnig, S, Krasnow, MA, Brown, PO and Herschlag, D (2006) Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster. Proc Natl Acad Sci U S A, 103 (12). pp. 4487-4492.

Gerber, AP (2006) Pharmakogenomik im Modell der Hefe BioWorld, 2006 (01). pp. 2-3.

Gerber, AP, Herschlag, D and Brown, PO (2004) Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol, 2 (3).

Shepard, KA, Takizawa, PA, Vale, RD, Jambhekar, A, DeRisi, JL, Vale, RD, Gerber, AP, Brown, PO, Herschlag, D, Brown, PO and Takizawa, PA (2003) Widespread cytoplasmic mRNA transport in yeast: Identification of 22 bud-localized transcripts using DNA microarray analysis Proceedings of the National Academy of Sciences of the United States of America, 100 (20). pp. 11429-11434.

Wolf, J, Gerber, AP and Keller, W (2002) tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli. EMBO J, 21 (14). pp. 3841-3851.

Gerber, AP and Keller, W (2001) RNA editing by base deamination: more enzymes, more targets, new mysteries. Trends Biochem Sci, 26 (6). pp. 376-384.

Keegan, LP, Gerber, AP, Brindle, J, Leemans, R, Gallo, A, Keller, W and O'Connell, MA (2000) The properties of a tRNA-specific adenosine deaminase from Drosophila melanogaster support an evolutionary link between pre-mRNA editing and tRNA modification. Mol Cell Biol, 20 (3). pp. 825-833.

Gerber, AP and Keller, W (1999) An adenosine deaminase that generates inosine at the wobble position of tRNAs. Science, 286 (5442). pp. 1146-1149.

Maas, S, Gerber, AP and Rich, A (1999) Identification and characterization of a human tRNA-specific adenosine deaminase related to the ADAR family of pre-mRNA editing enzymes. Proc Natl Acad Sci U S A, 96 (16). pp. 8895-8900.

Keller, W, Wolf, J and Gerber, A (1999) Editing of messenger RNA precursors and of tRNAs by adenosine to inosine conversion. FEBS Lett, 452 (1-2). pp. 71-76.

Gerber, A, Grosjean, H, Melcher, T and Keller, W (1998) Tad1p, a yeast tRNA-specific adenosine deaminase, is related to the mammalian pre-mRNA editing enzymes ADAR1 and ADAR2. EMBO J, 17 (16). pp. 4780-4789.

O'Connell, MA, Gerber, A and Keegan, LP (1998) Purification of native and recombinant double-stranded RNA-specific adenosine deaminases. Methods, 15 (1). pp. 51-62.

Gerber, A, O'Connell, MA and Keller, W (1997) Two forms of human double-stranded RNA-specific editase 1 (hRED1) generated by the insertion of an Alu cassette RNA, 3 (5). pp. 453-463.

O'Connell, MA, Gerber, A and Keller, W (1997) Purification of human double-stranded RNA-specific editase 1 (HRED1) involved in editing of brain glutamate receptor B pre-mRNA Journal of Biological Chemistry, 272 (1). pp. 473-478.

Book Section

Matia-González, AM and Gerber, AP (2014) Approaches for Dissecting RNA-Binding Protein Networks In: Fungal RNA Biology. Springer International Publishing, pp. 347-370. ISBN 978-3-319-05686-9

Gerber, AP (2007) Coordination of functionally related mRNAs by RNA-binding proteins In: In Leading-Edge Messenger RNA Research Communications. Nova Science Publisher, Inc., New York, pp. 79-91. ISBN 1-60021-489-4

Report

Gerber, AP (2010) Exploring the RNA World: An introduction to Genome-wide analysis of RNA-protein interactions using RNA-binding protein immunoprecipitation (RIP). [Report]

Conference or Workshop Item

Howlett, P, Waheed, A, Horton, A, Shah, N, Leatham, E, Wu, H, Gerber, A and Mahmoudi, M (2015) MICRORNAS REPRESENT NOVEL BIOLOGICAL MARKERS OF CORONARY ARTERY CALCIFICATION In: British-Cardiac-Society (BCS) Annual Conference on Hearts and Genes, 2015-06-08 - 2015-06-10, Manchester, ENGLAND.

Book

Gerber, AP (2011) Global Analysis of Protein-RNA Interactions – Discovery of RNA-Protein Networks and Their Implications in Human Disease. Südwestdeutscher Verlag für Hochschulschriften, Saarbrücken, Germany. ISBN 3838113381

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